NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0207887_1008752

Scaffold Ga0207887_1008752


Overview

Basic Information
Taxon OID3300025069 Open in IMG/M
Scaffold IDGa0207887_1008752 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-38 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1557
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.9853Long. (o)-145.0838Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000704Metagenome928Y
F000730Metagenome / Metatranscriptome917Y
F001922Metagenome617Y

Sequences

Protein IDFamilyRBSSequence
Ga0207887_10087521F000704N/ATDVGLTETALTFSTATVTRDTSDSNQPVDTYPRVFSDTDAGLLLNEGNDTAFNQTYTLDPDMTAIIYKISLNFCAVLTCSAYTNGGLSIGGLHIKITERSTNNRLLYENTFQSGAATLGATGTQIHWFTQDIVETIKINKGNPVDIQLDLVTVVTGSNTRQEGYAPLAPVLKTAVLKSFFESGMSLHLHPDLSHADGVFKYSKQRVSMLGQ
Ga0207887_10087522F000730GAGGLVSELIPPEIIPLVWFSCIAVTVYVFFRVFSSTLKEKFRQTNLTRKKAEGSGHTDGQIDDLINNAPRILNEINKQIKEQEISGVTQDQMKGLLQKRQMLELVTNNAEVINIIGKPIIKKLLSFVKGI
Ga0207887_10087523F001922GGAMVIQKLLVEEGMKRGLKASREYSVSVLGYDFVGLISRLTLFFVTGFLINSYFAATIQGGSWLNSLAGFFGLNFPTTLPEWTTKLFTTGFHNITFWQIVQTIAVLIVVVEYMQYDRMLKETDQKPNVTTTSVFAMIGLGLSLITFPQIIQKVKEMRILQK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.