NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0208012_1003715

Scaffold Ga0208012_1003715


Overview

Basic Information
Taxon OID3300025066 Open in IMG/M
Scaffold IDGa0208012_1003715 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 15B_ETSP_OMZ_AT15312_CsCl metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3314
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (63.64%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.51Long. (o)-76.2Alt. (m)Depth (m)100
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001081Metagenome / Metatranscriptome784Y
F003410Metagenome / Metatranscriptome488Y
F056673Metagenome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0208012_10037151F056673AGTAGGMVLRISWRQRYPERVAESDFKYNNSERGFIINKIGDIFKPSKGKHRKKRWLPQMTKQKIWEALFLHVEFMKCLYPKSDGRLCRYCHQPWTYLTRKKQPGVSKRNKRGSQHPTNFTVDRMDAEFTYLPGNIIFSCSA
Ga0208012_10037152F003410AGGAMKVIIILATGALLTFPTMKDINPDCFSQGYAILQQLAVYHDAGPDQAWILKDANIEVGGWYCE
Ga0208012_10037158F001081AGGAGMDKELIAPIKHTKICDNCDGNGYLNVVDNQNLTHIKQCWVCESNGEIKNYDQAEVDDFIYNTYFRKRV
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.