Scaffold Ga0207906

Basic Information
Taxon OID	3300025052 Open in IMG/M
Scaffold ID	Ga0207906_1004112 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - LP-37 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025052 Open in IMG/M

Scaffold ID

Ga0207906_1004112 Open in IMG/M

Source Dataset Name

Marine viral communities from the Pacific Ocean - LP-37 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2202
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

2202

Total Scaffold Genes

4 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	50.0	Long. (^o)	-145.0	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

50.0

Long. (^o)

-145.0

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000704	Metagenome	928	Y
F001606	Metagenome	664	N
F001712	Metagenome / Metatranscriptome	648	Y
F031891	Metagenome / Metatranscriptome	181	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207906_10041121	F031891	GAG	LVNEFIPPEIIPLVWFSCIAVTVYVFFRVFSSTLKEKFRQTNLSRKKAESSGHTDG
Ga0207906_10041122	F000704	N/A	VAKLPHGRSEIQPSNVKAVATYGIDAYGEDLFLPFTDVGLTETALTFSTAVVTRDVEDSNQPMDDFPAVYSDTDAGLLLNEGNDTQLSQTYSFVPDMTAIIYAIHLVFPAVVTCSAFTSGTLNVGALHIKITERSTNNRLLYENTFQSNAANLTATGTSLHFFQRDIVETIKIEKGNPVDILVELVTVITGTNTRQEGYCGLAPYLKTAVLKRFTPAGMALHLHADLSHADGVFKYKKDRVSLLGQ
Ga0207906_10041123	F001606	GAGG	MTYGYDDVTTTALGTGTAETQLNSGTSLSAPDPAHAFLACIPYQSESAAFTVDQSLLTAFRIQSDDVAVEPKKFVLPNVNTGDAAFTSVAAPALLAYPINTPLAGGEHLNFYGQPLVANTVQPICGATVIYDTESTNGAEQYYTRPTNETAAATAVDTRTEGGSMTIQGGNEITGLYTVVSGGVATASQHDVGYSEFLSPDFNTSMPYRVAIQPTYTGLGSAANAVTGGGGIMQYNMPRGKGIPLANNVTITNYYTNRDARTGASNFINFVRYSKN
Ga0207906_10041124	F001712	N/A	RRRLPSRKKVSKSIGSQWGKISKGAGVLAFLSNVTGSDMSASAGQPIGARAQNFGNSLLGRISGYTPFKNAAGAGTPQTIGIDGIFNKWSGIGLASTVYGMLPLKMLPHKGKAKTLGKSLLTAGVLSGLFMPTNNHSSNLISSTPITVTSSEVSYT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0207906_1004112

Overview

Ecosystem & Geography

Associated Families

Sequences