NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207898_1000447

Scaffold Ga0207898_1000447


Overview

Basic Information
Taxon OID3300025049 Open in IMG/M
Scaffold IDGa0207898_1000447 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-55 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3801
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (69.23%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.567Long. (o)-138.6676Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005131Metagenome411Y
F032813Metagenome179N
F040683Metagenome161Y
F055789Metagenome138N
F061266Metagenome / Metatranscriptome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0207898_10004471F005131N/AQVKKSRPAIAAEIKDMPMKDFKVLWFVVQQALKVKKRNRLN
Ga0207898_10004473F040683GGAGGMKKYRVWGYETQGYYIDLDANNKQDAHDKALDVNRDDWIEGNDGESTCFDINKKDMEVIKDE
Ga0207898_10004475F061266AGGAGMFGTTKEKDLKLKRFMVMCKSKSGTTFYHEKSFFTLADADAYANLVRRQEDEQGNHFYLFEQSKHYGNGEDKK
Ga0207898_10004476F055789N/AMSDPYLEKIAKEKHLHEYEKEITDAKKEIFALKQEIIHLKADVKYERELRLKGADYHKPKDYHSRFKLMMGVVRNEKKLTDLFDIVAEAQKRLKDE
Ga0207898_10004479F032813AGGAGGMKTNEEGHVWLEKFQAYICPSYLNKTCTDFSDTDSESLYNLYQKHFPNAESNAIKSQIKDEVFNLIGKDNYKKKNLIKALRNKFPDIKSGVICRILKKYLSLRVLEIDRTYKTKPFVIKGKYCIN
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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