NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207905_1002754

Scaffold Ga0207905_1002754


Overview

Basic Information
Taxon OID3300025048 Open in IMG/M
Scaffold IDGa0207905_1002754 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - LP-49 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3576
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0003Long. (o)-144.9998Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008453Metagenome333Y
F019909Metagenome / Metatranscriptome227Y
F020259Metagenome225N
F026537Metagenome / Metatranscriptome197N

Sequences

Protein IDFamilyRBSSequence
Ga0207905_100275410F008453N/AMSNYAVYRVFRDSEKRPEVLMDGLTREQAQTIVKNTPSDDRSMVVFDEEPRDKQWGRR
Ga0207905_10027544F020259N/AMTEQTFTAVADWAERIQMMTQDNNLINAQDIVHDVFGMLRDDEHFLPRL
Ga0207905_10027546F019909N/AMTNFEQHIGQELPQAILDHIDAHTTEELMQQAERLKFDSWCPVVMENDSPELRKDLKEASELLFKYIDFQLVTDEIWNSEN
Ga0207905_10027548F026537N/AMNKKYHMKKEIINRLEYVEETYAGEIETWQDPVTKTYYHVPIYITRCWDETEALESDKQNTMTHERKEEHIRNIAFCIRDGASGYVTDNFRIEDLPTPQRTGTMTQQDTYSKHKSRQIFEAFLEQNPNTND
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