NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207905_1001201

Scaffold Ga0207905_1001201


Overview

Basic Information
Taxon OID3300025048 Open in IMG/M
Scaffold IDGa0207905_1001201 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - LP-49 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5662
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (82.35%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)50.0003Long. (o)-144.9998Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025413Metagenome / Metatranscriptome202N
F041494Metagenome160Y
F090620Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0207905_10012011F090620N/ASIDECCEEITGHTNWSYADKSDYEKIMSRRNGDHPNSDRIHSIVVFYNDEEEEEK
Ga0207905_10012018F025413AGGMMDYDNTDRGSFFKPRADESLLVQGKLDSNGTEHRIVIVKASLPDGGIARDVYAKVGTMYENDKSQNEKSPDFSGPVTLPNQDSRRIACWKTVSKDGNTKFLSARIGDKTPRVGDEPMTYDSNGEEINDEIPF
Ga0207905_10012019F041494GGAGGMTKYPSSEAMARTHDPKTSWEAAEKVNTNRLERVVLDAITAHGENGAIHDEVWETLPHLGKVREGSITPRYASLERKGLIYRNGDTRKGNMGRSQLVMYSLQKKA
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