NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207901_1005848

Scaffold Ga0207901_1005848


Overview

Basic Information
Taxon OID3300025045 Open in IMG/M
Scaffold IDGa0207901_1005848 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-46 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1794
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.9991Long. (o)-144.9989Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008559Metagenome331Y
F017323Metagenome241Y

Sequences

Protein IDFamilyRBSSequence
Ga0207901_10058482F017323N/ALTYLGLTFKILDMFNNNERDNMNNPKTKVFLVIKKTTWNDGETWFEVSEHSKSKERADQCRNALNTLKSDDKVSYLICEVANAK
Ga0207901_10058483F008559GAGGMPNKDAIFYIKYYATKYGETIERKGQLDGVAKGEYVCKKGHKVFNYLDIWATEKFGKPQYRNASVKWEFNDTSTLNVNHIDSVLN

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