NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207891_1030478

Scaffold Ga0207891_1030478


Overview

Basic Information
Taxon OID3300025044 Open in IMG/M
Scaffold IDGa0207891_1030478 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-50 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)655
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.9998Long. (o)-145.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002453Metagenome / Metatranscriptome558Y
F005094Metagenome412Y

Sequences

Protein IDFamilyRBSSequence
Ga0207891_10304781F002453GGAMAPIEFPTLYDSWYECSREAHVESIKLMSKMGYKDVNDYKVGTKYHCKAVRTY
Ga0207891_10304783F005094N/AMGRSVNSFNTLVGHTADIDETRVTLPEKELWVAVLCRAVLDAVKGPPRLDLTSRANISHHNYYKYNREAAR

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