NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207891_1022374

Scaffold Ga0207891_1022374


Overview

Basic Information
Taxon OID3300025044 Open in IMG/M
Scaffold IDGa0207891_1022374 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - LP-50 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)793
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)49.9998Long. (o)-145.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000937Metagenome828Y
F016594Metagenome246Y

Sequences

Protein IDFamilyRBSSequence
Ga0207891_10223741F016594N/AMTKFILFMWLCSGVAHDCKRIIIPYTTFDSYRECSLYGYQHTVDILTKMPEEETEKWQIHTRFSCKAETTI
Ga0207891_10223742F000937N/AMVKEIVLIILLFSYGELSLPSFPFEGTVHECFAYGDQLREELATYNEERNVWFLKDGSGTWQGFIC

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