NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0210005_1013734

Scaffold Ga0210005_1013734


Overview

Basic Information
Taxon OID3300025005 Open in IMG/M
Scaffold IDGa0210005_1013734 Open in IMG/M
Source Dataset NameGroundwater microbial communities from aquifer in Utah, USA - Crystal Geyser 4/9/14 0.2 um filter (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3371
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location
Location NameUSA: Utah
CoordinatesLat. (o)38.9383Long. (o)-110.1342Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036462Metagenome / Metatranscriptome170Y
F042607Metagenome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0210005_10137342F042607N/AMPLIVIDNKRVDLTYDEIQLYNKIVASYTNLTNKGEDLFIDLFETDDNGTIIFLKPPSKRQTSFEVFLFLMAVMQQQHIRLMYKQVEDLCAQVNEKLKDK
Ga0210005_10137343F036462GAGGMTNKVSLSDFLGDSLEENFLEFDLTSIQEVLESLAEESAHDLSHAELLQQKSLRGADILSEYLCKIVKTVSYLETKINSTKNKVSLEYTAPEGTRTTSEMKKWAGESSSEVEELQIRLAKAKASKMVLEKKYDILIKSHHHFKDIASGMRKTILGYNSGTTEKVPEGYE
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.