NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210052_1000064

Scaffold Ga0210052_1000064


Overview

Basic Information
Taxon OID3300025003 Open in IMG/M
Scaffold IDGa0210052_1000064 Open in IMG/M
Source Dataset NameGroundwater microbial communities from Crystal Geyser aquifers in Utah, USA - Crystal Geyser metaG 2015-08 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)96571
Total Scaffold Genes201 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (12.94%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Aquifer → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location
Location NameUSA: Utah
CoordinatesLat. (o)38.9383Long. (o)-110.1342Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015419Metagenome / Metatranscriptome255Y
F022890Metagenome / Metatranscriptome212Y
F029285Metagenome / Metatranscriptome189Y
F046978Metagenome150Y
F075520Metagenome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0210052_1000064126F075520N/AMKTLHYILNTKTDESFDTIEMKFYPNNWEPEMEEDKDYLQSLIDEDPEKFKNCIIETRTF
Ga0210052_1000064140F015419N/AMKYEFKITDEAGNVFLYDVSRSSSDEEKSLNDFILEALQISEDKRKLPFKIQCPNNLEVYPLLKMKFENYGSPLLGDKLEAMHVTWRD
Ga0210052_1000064145F046978N/AMTEDTKQKAVNLSVLVLGTENISGYISYLINKAHLEAQK
Ga0210052_1000064153F029285N/AMKNKADYSKYECPYSHLEKESGHELHGPEGYQDCYGVWCACGFRAPVFYLEPDELGLKLKKETDVATCA
Ga0210052_1000064177F022890N/AMMKSSDHNPYTGKLSESANVLAAIELAKKFKEFADEVYTDEAMGIESSQWVEVINKLEEKRLNCA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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