| Basic Information | |
|---|---|
| Taxon OID | 3300024430 Open in IMG/M |
| Scaffold ID | Ga0196962_10000060 Open in IMG/M |
| Source Dataset Name | Soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_20 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 85312 |
| Total Scaffold Genes | 82 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 73 (89.02%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Sand → Desert → Soil → Systems Level Insights Into Methane Cycling In Arid And Semi-Arid Ecosystems |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California | |||||||
| Coordinates | Lat. (o) | 33.305 | Long. (o) | -116.2547 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F025139 | Metagenome | 203 | Y |
| F025378 | Metagenome / Metatranscriptome | 202 | Y |
| F028302 | Metagenome / Metatranscriptome | 192 | Y |
| F028932 | Metagenome | 190 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0196962_1000006013 | F028302 | AGGA | VADVHIYVTSPAEKEGAALEDVEEVLRELDYVSGVEARPEGNVVAVSFEGGKAEQEEITRTVEETGYKVSRLSVRTTFTDEGHLWDI |
| Ga0196962_1000006014 | F028932 | N/A | MIWFAWFMLALESLVIAIGLWLMWAMVSEASRERGEAFPPSEDPPAHPPGHPFETGDDSARFTLEEVDERGYVGSRKLHMGCEAAICRTPLGARIIAGRRSLKEPQYAWDYASVRLADKALAYAEFSTHPTDGLIGVEDYERGPYPAAEPGQYLRRWRYTPDGRMERL |
| Ga0196962_1000006016 | F025378 | AGGAG | MRRNFGLVVVASALVALLLLALAVARAQDHLPLLALDFTEHLFGIVLAVFVFERMLAWREARQWLAAKDWLYLILLESVDDLLKGLLPATVPREEEGTGERTVVYEVTGERIHVGETVRYSPLRLLVTPGEKDLQSDIFWYATELGPLRYVELAKEALSDARSQIRDTFGSSARLMDAEITTMLISFEQAAMAAIRHLDSAVHLRNEKAEDASYLDGEASTTQRTREADNELAFVSSIIVESVVDSAMKPKAWLEDQRHTREGPSSPFWRLQSSSRAGTGPKQRT |
| Ga0196962_1000006069 | F025139 | GAGG | LYRQARLLGALLILQFLAMVGLGVWLTTRVNWDRALDITSGQGQFNFQSVEGPWLKALERSIVFDVYFLVPMILLLLSGLGFVLLRRRGWMLASIAQSLIMLACLFYYGDSRPWFAYPLIAYSILMILLLNSRSVRAAVQSRRAAPVGTRSEVAHGE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |