NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0233393_1006628

Scaffold Ga0233393_1006628


Overview

Basic Information
Taxon OID3300024413 Open in IMG/M
Scaffold IDGa0233393_1006628 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 21D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3342
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (27.27%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014147Metagenome / Metatranscriptome265N
F035317Metagenome / Metatranscriptome172N
F080086Metagenome / Metatranscriptome115N

Sequences

Protein IDFamilyRBSSequence
Ga0233393_10066282F014147N/AMTTIKNTFEQQLHEKFGVNVMSMEGVYSAILADGTHGTDYLDYYDTNAGWIFGVHPELQAFIDAHGWECEWRNSEVLDLYPGHDWTSDFSEAQLVSHWNAMCDYITAPQDHVYANDDEAFEMLQLTIRQTVAASKNDRYNFDDKWLTLDGYGNPMSFNSLLNYIDVPELEEYLIAHALI
Ga0233393_10066284F080086N/AMEVSIEALANECAKHDFAFMENPWRQRHWSNEYDRRARIFTMLERLGHSSKAIEVYNTYAPAFAKRPPRSKYY
Ga0233393_10066288F035317N/AMEFDIICVTRKQITMTEMKLYMQRCEEVRKQKMAERHAEATDEFGFCSGTTYKEWTAKTGMKGVSRKGKTFSHTKLWDYRG
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