NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209979_1000733

Scaffold Ga0209979_1000733


Overview

Basic Information
Taxon OID3300024353 Open in IMG/M
Scaffold IDGa0209979_1000733 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Anholt, Denmark to uncover new lineages of life (NeLLi) - Anholt_01485 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)41308
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)39 (88.64%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameDenmark: Anholt
CoordinatesLat. (o)56.62Long. (o)11.67Alt. (m)Depth (m)31
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047751Metagenome149Y
F072485Metagenome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0209979_100073331F072485GGAGGMLYLYENITIVSRFQEEFWRVMGTDYVPDAEQNGLRLVGMFMVGIHYNENLALWEVDDWATLDRIQEFHDKDPLAKVWEREAVDYRTDWVGKVLEPASFSPTLAQIKEGDYKSTIYLHTLARVVPGKVDEYIDAIGKELMPMARGWGMKLVGCYHAVAGTASSGEVINIWTAGNIHGDWVKIREASLNDPTYKDWEAKAGKWRPKVVYRFLYGLVPYSPLRTPFLPDEVTSEEVRTVAMPEVEWGKD
Ga0209979_100073332F047751AGGAGGMPEELPPEMKESIDEFYLEMSPEIKDLIHGWLYKIVDAAYAGIAELPPEHRDRILMKISKACSDQAKMVLGCQPGMDWEEYKKYMAELKPPFGPRKITQIGDVVHWTYVPPKDKDGRPICQCPLIMFGWMEPRPEVCACSANSVASYIEEYTGREVATVETLGSPMVGGEEECRFLVHLKPSAFSTPKHE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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