NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255142_1002633

Scaffold Ga0255142_1002633


Overview

Basic Information
Taxon OID3300024352 Open in IMG/M
Scaffold IDGa0255142_1002633 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Altamaha River, Georgia, United States - Atl_Cont_RepB_0h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3252
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (63.64%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae → Verrucomicrobiaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.4271Long. (o)-81.6053Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001018Metagenome / Metatranscriptome804Y
F008128Metagenome / Metatranscriptome338Y

Sequences

Protein IDFamilyRBSSequence
Ga0255142_10026335F001018N/AMAQITHTKLKDLNVLKLYEHYGALERSLPLLTPESQEVARAELEACANLRSEKIDRIYYAMAAHEDALERIKKEAEHLTAAKRHHESQLRSLKGLLNYLRRVLPLDSNKITGRNYQFTLVKKKELTVEISSDPEFWHTKERELYCIEEETTTIKRVVLRSMSGKVLEERTEPTTKSKVVPNLNALRSAYQDGQPLPHGVKVIQEYGIRSKRIFSEPRVELDASEYPGELLPETASTTDD
Ga0255142_10026338F008128N/AMEPITVPKLTVSFAVDLEVEYNSFGGKTADEIAEALQDDMDDLLFELGQVTSVCTSCTSINFND
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