NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244776_10079767

Scaffold Ga0244776_10079767


Overview

Basic Information
Taxon OID3300024348 Open in IMG/M
Scaffold IDGa0244776_10079767 Open in IMG/M
Source Dataset Name0.2um to 3um size fraction coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2485
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001840Metagenome / Metatranscriptome627Y
F045085Metagenome / Metatranscriptome153Y
F055439Metagenome138N

Sequences

Protein IDFamilyRBSSequence
Ga0244776_100797671F001840N/ADSIFLICDCFEHGLLVEKFKDEEEVSLSLFERGLNGRTLCWSERLRWCWQILRYGKPWSDFIILNTENQKQLKDFLNEVQKF
Ga0244776_100797673F045085N/AMNKLYKVIDLTVGLVFGSIFAIGIILVIAIFFAVLIPSIFYFTVREVLKQLTKK
Ga0244776_100797674F055439N/AMNKISESIIVTYAKALRRIQTEQVDPYIELIEKELIKLYPELKDREDNALNWAYDIINADSTAEVIETLDRIKQIFEEEYKEKWVCCICGKNTYDVDCEYLAGIDHLSCLTTEELKKSNPLKNKDELSEIKNQFVNMKMYIKQLEEHIQRLEKQYDEPTN
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