| Basic Information | |
|---|---|
| Taxon OID | 3300024348 Open in IMG/M |
| Scaffold ID | Ga0244776_10042314 Open in IMG/M |
| Source Dataset Name | 0.2um to 3um size fraction coassembly |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3602 |
| Total Scaffold Genes | 4 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Columbia River Estuary, USA | |||||||
| Coordinates | Lat. (o) | 46.234 | Long. (o) | -123.9135 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003521 | Metagenome / Metatranscriptome | 481 | Y |
| F004695 | Metagenome | 427 | Y |
| F032633 | Metagenome / Metatranscriptome | 179 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0244776_100423142 | F003521 | AGGA | MKSLVSNIRAYLNRRTKVVDSHKEANVNRKTLVIENGESAKKLLRNDDFALLFNLYRFYLLEMLEESRDDVNRIDNAQRVAGVRDFIEFIERTEYLGKVANKNVETLTK |
| Ga0244776_100423143 | F004695 | AGGA | MLDKQNVIVENLASSSGNRGLTEQVCHEVYVKMVDYLRLTQSKNTYNRFTDYHYLNIPVSNSTEPIRGIDYIQPIVAPGIDYATAVITKCLMPNGKINFEFERFSEADGDQARQATEMVKYMLNSKNDSYQVIRDWAQDSLLHKNGIVMVSPVRSPITQYKEVEGTRDQLRVFETLAGDKGLTAKRQNMRKIDVDLQGAMQEAMAPDESMQEPTGDELQDALRNNTIYRAKYKLTGYETSIRVKHVGQHYFVCNPTIPTIQDQDFVGFYDPMTIHECKSQFPFVDLEKLADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASQGADRYSRVIMLTTAWIRRDIDGDGEEEIVECCFSGSYILYAKEVDFIPLANMCPKPITGNFFGYSLGERLVPLQEYATAIRRAEMSFAMQSSTPRIGVNPEFLDAEEIQRGVSAMFILDRKFDPTKHIFEFQPMQGNLAYVESAMSRFESDKMAMIGMTSPSDTLNPEVMKDGNSGFKLQLAMGPNQLIQDEMVKNCAIGLRDVIYITWKTLIQYSDDYNIQQLAGTCLKGAPFMDALSIENFEFIDRKMINIDLALGFLSEENRLTRQQMILQAQQQFSQAMLQIPQEVPEMFIKVRRPFEDTLRVLGVKDVDAYLPTFEEAVKIMQAQAAKGPSAEQQETQSKVALNNAKVEESGSVTALNIRKAQDIDTDDMFEALAAKRGNLSSVQI |
| Ga0244776_100423144 | F032633 | N/A | VRHLQGFELDLVVLDEQPPDETFSELVVRTASRNGQVICSFTPLKGLSGLVRKFWDNIDGYCHIRVTWDDIPYENEWGEAFFPKKEREQLARDFMPWERDCRINGIPLVGKGVVFPLLEWPTYKSEDVDFRVNDKLERLISFDLGIKNDPTVISFFFRNPVEEIIYLHKQITIPSGETPDEYVHYLLDRETRDVPIALPHDAGLAGRYTLTEQSVREVFEDSYGLNCISGAILNPPNDQGKVTNHKAYGINIMRMGMERKTLMVNESCKAFLDEARNYAIDDAGKFSDPDDHIDSARIGILALIQGHGESVVSRANNFSFRRIDVPEGKVQRI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |