Scaffold Ga0244776_10005198

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0244776_10005198

Scaffold Ga0244776_10005198

Overview

Basic Information
Taxon OID	3300024348 Open in IMG/M
Scaffold ID	Ga0244776_10005198 Open in IMG/M
Source Dataset Name	0.2um to 3um size fraction coassembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	11989
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (54.17%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	Columbia River Estuary, USA
Coordinates	Lat. (^o)	46.234	Long. (^o)	-123.9135	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F068714	Metagenome	124	N
F070560	Metagenome / Metatranscriptome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244776_1000519819	F070560	N/A	MIMTNQTQQFKQLVSSAKPEAQIPKAESMVTVSSLMTTADHAQFNKGLVSLFVDVPHHVSGESQIFSVRPQQMVPRSAVIQRDESSQLVGISAVSGG
Ga0244776_1000519821	F068714	N/A	MKILEKNKSHIIYKEDNGIVSIVPNTPYFHMKVVEWKNERIKFDLPIEGIEVLETFNGMIFNISLNGKTITTRPNMADAVVKSFTDTNSLYEIFDKYNNNKYNIQLLKGVLEKHGDRIRILPAGFVIDDIFLVDRTGVCWIWDSDRQEADKTHRTNLGSGAVCIVVDKTQRLKLKTSNGLVEIDEMGYIILSKIEFLMDPNLNDTVFTHQIPKKVLKILERNKAENLV

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