NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244776_10000125

Scaffold Ga0244776_10000125


Overview

Basic Information
Taxon OID3300024348 Open in IMG/M
Scaffold IDGa0244776_10000125 Open in IMG/M
Source Dataset Name0.2um to 3um size fraction coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)90868
Total Scaffold Genes155 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (17.42%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F058139Metagenome / Metatranscriptome135N
F060894Metagenome / Metatranscriptome132Y
F074869Metagenome / Metatranscriptome119Y
F076088Metagenome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0244776_1000012547F058139N/AMAIYNNDKDPNVIQWEQEQMEIQINEPRRKFEQWWEQNKERILAEDQLNHDMQFKSKFIQNGDY
Ga0244776_1000012561F074869N/AMTMELQIRCLEIENWTRSLTMRGMDREEIVYKIDEMYEPETLDEMEVIAEAIAYARLGVL
Ga0244776_1000012562F060894N/AMAFQTRDQFQDKASKKLDRVLNKKKKEIPLSEQSWSDLNQRGATLAEQYEWIRLDKRKRERESNNKA
Ga0244776_1000012571F076088N/AMKKPKQNKLPEFVIFSEDGFFTGLANGGQPQWSMEIKNGKPFNNECKLGALQYVVGAKELLIEYIN
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