NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10117183

Scaffold Ga0244775_10117183


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10117183 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2257
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005299Metagenome / Metatranscriptome405Y
F011762Metagenome / Metatranscriptome287N
F077291Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
Ga0244775_101171833F011762N/AMSKKTNEIKLGKRGYKAVVKNKKFNFGDGKHIYEVIELSGPKMDKPRIFVDEESVRKYIGELDIEIKMDKLETSLIKNVLSKKDKREVLASKELSDMVPALEVLVDANFRDNNAKRPEDTDK
Ga0244775_101171835F005299N/AMNKITNTPNHLIDPIDTPNEIWESKVGYDSANKRMVAKVYKHLYNVMEFTTKPSWTAVIREMLIEDNKLGKVSLNGYYSTIRKNLKDIEVIKYNGRKGLERGKNWDRFFGNEDWTWFITNTNSGGYGRIVK
Ga0244775_101171837F077291N/AMNNENEITLTLTKKQLKSIILTMGIALDTDCKPMNEMSDKKLENLLILHEVLQDISNQAK
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