NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10076188

Scaffold Ga0244775_10076188


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10076188 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2872
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002260Metagenome / Metatranscriptome577Y
F003807Metagenome467Y
F041183Metagenome / Metatranscriptome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0244775_100761881F041183N/AKVARMPGTPVIILDSNGDAYTDSNAIAGQEGSSLTRLLAELTGGAVSQSGGSNLSALGNELLSTGKIESVYGCMVMFTTFLQSASRTFIGSSNVPVLVGAYFGDSALFTVMKEGLQLKSGEVPGGLQIWLTGVGYFGSGVGDLRRGGAINIQQNA
Ga0244775_100761882F002260AGGAMSVPYQRISNATVQDIAFYDPAAERRAAALNVDWAPYFKVGSQEWLYKLEFGWWQKYCDTVLGAYYYANLPNGQLISSFNPSQLIKNDQTLIRLDTFGAILVFYESLVTDVSNMNEVDMQNYEFAQKRCESEWTKALQLMNFYDLYQDSPNGPTTKLEENWTADVDFFNGDRRYF
Ga0244775_100761885F003807GAGMTDQIWLKTNEEKIRSLIADEAKMMPMLDNMQATIKQLKAKQAFRLALLNQILEELDEKQ
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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