NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10059341

Scaffold Ga0244775_10059341


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10059341 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3309
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003691Metagenome / Metatranscriptome473Y
F005299Metagenome / Metatranscriptome405Y
F008359Metagenome / Metatranscriptome334Y
F103233Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0244775_100593412F103233N/AMSKGQTDNELYEALIDLGYDFGEIDTDDFDEDGFAETAVNLGYRWDENKKEWFNK
Ga0244775_100593414F005299N/AMSSIPTHNPHTIDGFDSPLYIWEEKVGYDSANKRMIAKVYKHLWNVMNFVTKPSWTKIITEMLIEDNKLGKVSVNGYYSTIRTNLKDIGVIQYNGRKGLSKGPNWDRFYSDEDWSWFKTNTNSGGYGTIVK
Ga0244775_100593415F008359N/AMSKSKLNVKSKYSIKKVKRVMRMKSEDFEPTTFEVYKVSGPNKFKKYFVSRKDAKSFIDKYTDTKMTLGIVKNIMNEIKYK
Ga0244775_100593417F003691N/ALVDWQNCRNLVYWVESKTHHIKKKLYMNSRMTNEFNQFTETAYNTSRNERPIYKNFAATKLSSAVKPNSIVEFTDFMGRKHKVAVRNNTELKKQMKFFAELKKESATIKQIISQYPIKLGKVEKRFVADCKRELKQFGLTKKAIDIVLG
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