NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10047153

Scaffold Ga0244775_10047153


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10047153 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3766
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034245Metagenome / Metatranscriptome175N
F089156Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0244775_100471533F089156N/AMVLFQFEQSIITDNLPVDVIKVLHHHTYLLDVQLNEYDLINQITSNFNVVSMQSNNDCAYIDVYERLTTSYTVLQAEDKLVHLIEKLDLLAFTEPQIICISWQMDRNYIVDYRINRLLEAGHKVVCAGGNQDLPVLDISPVAVDGVIRVGGNKHNGKYQNWIDLYDITVPDINCSNEAAHRVCEIMTNKELELEYKLDFYSESHIRSAPWPLRLAQTPSSNHKVYEFNPVSNLRYIAGEHLLPSRPGDVTSVLSGSTPLENFVGVDNIELDSDMPRGITFDPNVGWLYGTFKYKEAMFHKILADINGQLFEYHIISCDADSKPSYDEVKQTYFDRPYDAPPFTLREYWVPMARPVKLLEPGDPFIRTYNLNDLHLYRSYE
Ga0244775_100471534F034245AGGAGMRGITFSEFSGGQNVDMFLHAPETMPGTPMQEAIKTAVTIREKYTKDIYVWCDYSVQHMYSQLAMQAFKMAGIDFKAAIPILSNDLSKRENECTIAYCESRNIPYELFYIDVPALFDGPDFLYWGEHFPTTQPQMTIVGQFFDLLPDCCLVYPGFMMHVSNSEWTRSKNNGFMPFVPHATQEHAAAHAGLEYTNFQEHYVNMYSSWFFTQSYSEVFKMATQEFVDNAPHRYYQYEMRTIKQAGFDIKPTTQKLIGIELLKSFFGHDKYDKELRQKLMPYGPLTMKYASLQYTVKVDTKLKDMLETYYETNFEFLNKLF
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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