NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10029473

Scaffold Ga0244775_10029473


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10029473 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4899
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006385Metagenome / Metatranscriptome374Y
F007263Metagenome / Metatranscriptome354Y
F038479Metagenome / Metatranscriptome166Y
F051126Metagenome / Metatranscriptome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0244775_1002947314F038479AGGAMTSLTLEQKIAKAAHMVANGEVVSFRGASFDTYMKVERMANRIKQEREFPQCPCGECD
Ga0244775_100294734F007263AGGMLNIIDKTDFYEIADEQHFCCDESQFKYYCEKHLEFMGCYFCQFDYDKDCEEQH
Ga0244775_100294735F051126AGCAGGMSAKPYTIQDLLVGKHYRSHTRHDEGVIQYATPRPEIWYGSDFEAYAIEVRSTRGIKNFWATVAVKVGA
Ga0244775_100294736F006385GGAGMILDNGTLIAIVIALAGSLGMMLAFWQRNVQLEKEIRRLQIALRTERLKK
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