NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10028486

Scaffold Ga0244775_10028486


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10028486 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4988
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003691Metagenome / Metatranscriptome473Y
F005299Metagenome / Metatranscriptome405Y
F008359Metagenome / Metatranscriptome334Y
F017485Metagenome240Y
F077291Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
Ga0244775_1002848610F005299N/AMNNNIPTTLQNPIDTPNEIWENKVGYDSINKRMIAKVYKHLYNVMTLTTKPSWTAIIREMLIEDNKLGKVSLNGYYSTIRKNLKDIEVIKYNGRKGLSKGKNWDRFFGDEDWSWFITNTNSGGYGTIVK
Ga0244775_100284863F017485N/AMNRLNKKDILEGVTFILMVVGIIGLMCVLYEVNELKGLSKGASNFRSITTTK
Ga0244775_100284866F003691N/AMYWVERMTYHIKKKVYMNSRMTNEFNQFTEVSYNTSRNERPIYKNFAASKMSQSIKPNSIVEFTDFMGRKHKVAVRNNTELKKQMKFFGMLKKESSTIKQIISQYPIKLGKVEKRFLAECKRELKSVLKLTNKQLEIVLG
Ga0244775_100284867F008359N/AMSKSKVNVKSNYDIKKVKRVMRMKSENFEPATFEVFKVTGPNKFKKYFVSRKDAKSYIDKMTDTKMTLGIVKNIMNEIKLK
Ga0244775_100284868F077291N/AMYNENEITLTMTKKQLKSVVSLMGIALETDCKPMNDLSNKKLENLSILYKVLKDMSKQSK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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