NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0244775_10026264

Scaffold Ga0244775_10026264


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10026264 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5220
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (7.69%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012774Metagenome / Metatranscriptome277Y
F012978Metagenome / Metatranscriptome275Y
F013085Metagenome274Y
F017132Metagenome242Y
F041601Metagenome / Metatranscriptome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0244775_1002626411F017132N/AMIRKLETAKVGEDLYEIVKKVPIQRFTKEITGEYAEALKKYYEVEKILKFNQTQEYLFVNLIQELEIL
Ga0244775_100262642F013085N/AMQILSEIIEVSDEMVNSLQEDGFFEEHQFIDRIPLKRALQIAMQRKWEQENDMILTDKEFLEVCQNVSNTGIGKTIEDLVDKGALNMSVNKDGEILYSANKDFQFDKYEDEDEI
Ga0244775_100262643F012978N/AMKMKFNKTDDELKHMSEDELFEYLDAKAAHLKKHTSPLSSYKTKKFASIGAAISNTEFDYDSVKKIAEENDRLATEKFIKNKYKK
Ga0244775_100262647F012774N/AMKETPIILHIDLGNDSLREWLYYNKYIIYSELLRFTKILLEDGLDTLQAIMVSNLSDNIVFVLKRNNINITLNKAMDYFMSIEEYEKCAEIRDLNILIQNLENETANIKISKSNKRGLESNR
Ga0244775_100262648F041601N/AMKQQILKLVNQIKEDLKAIDRDGVTHPLIDNVYETLELIEDEIYEDDAQADALSFEDEDY
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.