| Basic Information | |
|---|---|
| Taxon OID | 3300024346 Open in IMG/M |
| Scaffold ID | Ga0244775_10002339 Open in IMG/M |
| Source Dataset Name | Whole water sample coassembly |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 20812 |
| Total Scaffold Genes | 51 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 42 (82.35%) |
| Novel Protein Genes | 9 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 9 (100.00%) |
| Associated Families | 9 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Columbia River Estuary | |||||||
| Coordinates | Lat. (o) | 46.234 | Long. (o) | -123.9135 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F023351 | Metagenome / Metatranscriptome | 210 | Y |
| F039142 | Metagenome / Metatranscriptome | 164 | Y |
| F045097 | Metagenome / Metatranscriptome | 153 | Y |
| F059006 | Metagenome / Metatranscriptome | 134 | Y |
| F060913 | Metagenome / Metatranscriptome | 132 | Y |
| F068832 | Metagenome / Metatranscriptome | 124 | Y |
| F070111 | Metagenome / Metatranscriptome | 123 | N |
| F076103 | Metagenome / Metatranscriptome | 118 | Y |
| F092056 | Metagenome / Metatranscriptome | 107 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0244775_1000233910 | F039142 | GGAG | MTDFVPYTHPAVTRVYSTKDLVEQLFSNLRILAGTADKNSYIVGYLSACLADIANKGVDELTHIVDYTNQRIEADEYNKRADARRDEWANSALAN |
| Ga0244775_100023392 | F092056 | AGGA | MIEQQVLARGLANAPDAFDYIYECISGSHGNEIREYVDYLYQSVSIDHRLHPDDDFEDIINRVLDDLGA |
| Ga0244775_1000233920 | F076103 | GGAG | MRCTINNDKWEDVNKVYFVHSLQSRPNSTGVALSLEDENGNIHERVVAFHQIEWIEE |
| Ga0244775_1000233922 | F059006 | AGGA | MFSDNERAEIESVKAIVQKKLRELLSDLPADTYPFFKECILTGECFSPLFLDEEVHDWDVYLKDVVTAERFEFFVMSDTPTLNEVAEVTSEYRSITKVNGKLITANGITFKNGLQVVTQSCKKHRTTFDFVHTMPYFDMATQQLFISRQQYDSIKNKKLIKNPKFPQFNKSREDQFLQRGWSVA |
| Ga0244775_1000233932 | F023351 | GGAG | MVKEAKGGVFAPTDIHVIRRALHAYLIDIQRIEGFSDRDPHPDLNAVASLLHRLGRIDG |
| Ga0244775_1000233935 | F045097 | GGA | MTKDDIKEKAIEAIPYVAVLGIAALTVYGITKIVQAVNDLDYPLDFGYDEYLTGLSKNSRED |
| Ga0244775_1000233936 | F070111 | AGGAG | VTKISVELDSEQFDKVVVEELIRTRQTFLNDLGANNHVFVWGDQEADDIEIQKHIDAAELLLKWFSTKDQLAEMGITDD |
| Ga0244775_1000233944 | F068832 | AGGA | MSEVVEKNMFLEGLKWIGTACVIVAATCRAFEFHTVDLILSIFGAALWGYAAYEMKDKPLIVVNGFITAILLYGVVK |
| Ga0244775_1000233946 | F060913 | AGGA | MKMIKVYQIQLTDAEIAAVNSGETSDRIKAYFGRSFEGTFKAENFQYYTHVANVDTNDMEIAFEAMNLWEESIYFEDIFKLASCSSMSVGDILDVDGTLFRCASMGFDEIKA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |