| Basic Information | |
|---|---|
| Taxon OID | 3300024346 Open in IMG/M |
| Scaffold ID | Ga0244775_10001031 Open in IMG/M |
| Source Dataset Name | Whole water sample coassembly |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 33292 |
| Total Scaffold Genes | 56 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (10.71%) |
| Novel Protein Genes | 10 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 10 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Columbia River Estuary | |||||||
| Coordinates | Lat. (o) | 46.234 | Long. (o) | -123.9135 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000751 | Metagenome / Metatranscriptome | 907 | Y |
| F010694 | Metagenome / Metatranscriptome | 300 | N |
| F014160 | Metagenome / Metatranscriptome | 265 | N |
| F015230 | Metagenome | 256 | N |
| F025529 | Metagenome / Metatranscriptome | 201 | N |
| F032718 | Metagenome / Metatranscriptome | 179 | N |
| F034621 | Metagenome | 174 | N |
| F036311 | Metagenome / Metatranscriptome | 170 | N |
| F045196 | Metagenome / Metatranscriptome | 153 | N |
| F054043 | Metagenome | 140 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0244775_1000103112 | F034621 | N/A | MSNHITEIIDILRRGEFYGAGDFVEIAKGKNEMVITWRGLKRKVKRIIKAKR |
| Ga0244775_1000103114 | F032718 | N/A | MIRALSPFYIDTPLVYGGVTCAKYTLNVWVWNGDKSTPDSTNSYQITYQNTTASTGSHSININAIIQDYIEFTEPSPTLSTGIQLIDGNNQQWVYTYVTYDAVATLYHETTQIMTLGYAYGNEGRNVTAVSNQTLLNPQEYKVNREGNFVFPIYVPTGATSSAVTVKSYPSLAVNYTATPALSDESSEIVQYLWVELSLAVDEAYIEIVWQGQTTTLNLTDECKYTPLDVFFQNKDGALQSFTFFKKQEETIDVTDSSFETNRGQASDGFHQFVRYGVQGRTTLTAETGWLDEDMNEVLKQILLTERIWSYNGTTYTPLNIKKTSQKFKTRQNDRLINYTMTFEMSYNEINNI |
| Ga0244775_1000103123 | F010694 | N/A | MTIPVIFDNPHDFFEEATRQDYTDAHDLFYRSMVEYLLDESIQYVCTFIYNDYDKYLFEPQSEEDEIILSRDALLYFEYIEEYETCQLIFEVLNE |
| Ga0244775_1000103128 | F054043 | N/A | MKNLLQKLRPDLKDKLSLLNEEYPFTAHRIIKDLEATNNVYDVTFLTMATMQKFLSVSLDDFYFIFEQDA |
| Ga0244775_100010313 | F036311 | N/A | MKIYVDTITKELVLDNGIEYRYPAYCEIQRQKQGDFIIIKTTNNVSVLDKTIYSDLQDEAGTSYASFAALKTALDSYFDSVL |
| Ga0244775_1000103131 | F015230 | N/A | MNDTRDIIAEFTASERAIDKLQQPTIEIETTRNAIRETEKRNDGLSAELDAIQKRIDKGYKAIRESSNGEQRIAEAKKEISRLSGLIAWQDNRRKQFKTIIDRGY |
| Ga0244775_1000103139 | F045196 | N/A | MKVTKKDLKNFKGDKRSKKYRDLKLAYDKTIETKNVDDVGIGTTLEKVFKATGISKLVETFTPEGEDCGCNERKRLLNNSPTFNASQRPKRCMTKEMFEAYDKFVKTREIDKWSAEEFKLVFDTYEWVFALRYDTKRMCANCNGTANILKMITASLDKVYETY |
| Ga0244775_1000103145 | F014160 | N/A | MKTLKDSMQDFNAPFIEWESDHDNEVLQQDFVEAQLGEYGIEFSIYASRDISISHGTHFETQEVTVGDAYFDIEILAVFDQHYDDIDITDEEDEMIMNVIAHYYE |
| Ga0244775_1000103148 | F025529 | N/A | MQGSKEYFLRVKEAEYFDLPQALKERSVVYYNDYELYKDDPSFKALNKAYRNAKKALENWKYDQRHR |
| Ga0244775_1000103155 | F000751 | N/A | MNIYKTNFPTEQEGKDYLLSIGVLVETDGEIVFAKDTAAVVYIGKVVKIPATYDADGNIITPAVYYPGYAIDVMSAKPNLDFGSFMVYPIEAAHSFYGYARNAEVPPTKKNVESVESAENVEKKE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |