| Basic Information | |
|---|---|
| Taxon OID | 3300024346 Open in IMG/M |
| Scaffold ID | Ga0244775_10000885 Open in IMG/M |
| Source Dataset Name | Whole water sample coassembly |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 36159 |
| Total Scaffold Genes | 66 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 48 (72.73%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (62.50%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Columbia River Estuary | |||||||
| Coordinates | Lat. (o) | 46.234 | Long. (o) | -123.9135 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000441 | Metagenome / Metatranscriptome | 1136 | Y |
| F000852 | Metagenome / Metatranscriptome | 860 | Y |
| F002489 | Metagenome / Metatranscriptome | 554 | Y |
| F003379 | Metagenome / Metatranscriptome | 490 | Y |
| F003422 | Metagenome / Metatranscriptome | 487 | Y |
| F005741 | Metagenome / Metatranscriptome | 391 | Y |
| F074872 | Metagenome / Metatranscriptome | 119 | Y |
| F084239 | Metagenome / Metatranscriptome | 112 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0244775_1000088517 | F002489 | GAGG | MQEDQNKEVSSNLEDNLPMVNYIMLHRMYDLLTLISNKIVGSEDTQKMIEYHEAGYLLGPAPSFTPGEEE |
| Ga0244775_1000088522 | F003379 | AGGA | MKKLSALVSTIAIAILSGVALSKFLNWAGQVEIFDFDLDEDIDSEEF |
| Ga0244775_1000088539 | F074872 | N/A | MSDPFAIIRPYKKGSKMTVNGYTYKVGDLFTTLKSKKTGVIKEIIPNASGSVRVLLEMPTKETRWTTVSDSALTGA |
| Ga0244775_1000088541 | F005741 | AGG | MANRFRVEIYDANKMNDVTIYSEQGVDKEYLTELVYSNLRKFSGKVNAYVFDNVKKKKTTAMFLDEHTVNKYNVI |
| Ga0244775_1000088544 | F003422 | N/A | MTNELVSSKYTFVCDPDECDCLIELTSSDGFGFPSGVTELTCPCGRKTTLLSVEHATIAPSTQTKEEKMEETTTPAVTVPDTYNSNLLVTYKVIRGYSDAEYATDKVASLEWDLHNGRQSQKVANMLQGKIDTVKDIITEAYGDSEDQETLRSIAEALDIPLTRTVEWTASIEVSGTIELDLLSDYDTDIESEITDTLYVDAQNGNVEIVDQEVCHVREC |
| Ga0244775_1000088552 | F084239 | AGG | MEYLKIHLISLEQDLEQIDYVNGHHFYRVKQAEIENTRHILSVATDIMNSSNERYNNE |
| Ga0244775_1000088555 | F000441 | GAGG | MMRRNQMKMSDIYLNDQLDKAQKLLWGGSETENIEAHNIIAKLISDRIEQADLS |
| Ga0244775_1000088556 | F000852 | N/A | LKGDYQMATKREYLKSQGITVGVRGRFSGAAKVALAEAVAKGVTFTAEVPANKAK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |