NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10000666

Scaffold Ga0244775_10000666


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10000666 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)41661
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (63.64%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002188Metagenome / Metatranscriptome585Y
F003777Metagenome / Metatranscriptome469Y
F005130Metagenome / Metatranscriptome411Y

Sequences

Protein IDFamilyRBSSequence
Ga0244775_1000066610F005130N/AMAFSIQDYLANNKISTGTITQEVGDTPYKGGHNDIRKTNYEVKITEDGKLDLYTHKKVTTTK
Ga0244775_1000066621F002188GGAMIKDLQKILKQVHEPDEYQLIPHNMVHPLYWVWKIENAKMKDLDSFLRPFRKEHARFDIFINGQYILEKDYIAEQSGKDFHIKFIKANFAGAYNLETDDDIKLEGDIDLVXVKLNQIS
Ga0244775_1000066622F003777GGAMSKIKPNIITPFNDRQRFKDLVLEVISDTSIFTHIPDSISLNGVLFTLTLSNKKFVFEDVKVDGTSDYIDVYLQGIKKPADIYVVTDNGSDIIITFTENITLSPIDIVNTDFLVKGKIVS
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