NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209992_10057341

Scaffold Ga0209992_10057341


Overview

Basic Information
Taxon OID3300024344 Open in IMG/M
Scaffold IDGa0209992_10057341 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1839
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameKolumbo volcano, Aegean Sea
CoordinatesLat. (o)36.5264Long. (o)25.4868Alt. (m)Depth (m)470
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033868Metagenome / Metatranscriptome176Y
F099878Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0209992_100573412F099878AGGAGGMVYLNKYKQISDEAEKSLYSLVKDLINKNTTNILEVGTYAGQVTVRLAAAAAEKNDSVRVLSIDDNNDTFSPSAEESLKVSNLFNCSFESDRMEERFEENIMKASIIYIDRFHDEIDSKMDLIKKSALVPTKVIYRNPKASSDFPFEITEVSPQVKPRARKKTTEDTKVVEETKTKVSAKETKKETT
Ga0209992_100573413F033868N/AFGLRESTGTGYVGAPTMSGDRGIISYDEGKTPNNQVPSLIDIAVTAFTVNNHYNAANLSTQGSNSANDSTLIASAATTADFQGYQYQDGVQEFLDNSVTSVRNVSALSVQSSTNVPRFLPTSVGRALPLTIKPSSPAQSQIDLTVDALLISPTAVPISANVAAVIKGSARMLSRGNVFTTEMPALRFDFPASGNGDNFFEATIGNIAAGRGRTIKEKDIAFTTNLETGIIEFELRLSDGVRSLTAIDTDRNITQNLVDITASGSLGIVPIRITNLFNNESTIFRVGINSDSTKDSDLIRQIAQQGGSKLQS
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