NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209992_10043241

Scaffold Ga0209992_10043241


Overview

Basic Information
Taxon OID3300024344 Open in IMG/M
Scaffold IDGa0209992_10043241 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2198
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon TMED97(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameKolumbo volcano, Aegean Sea
CoordinatesLat. (o)36.5264Long. (o)25.4868Alt. (m)Depth (m)470
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F056072Metagenome / Metatranscriptome138N
F068815Metagenome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0209992_100432414F068815N/AMSKNARYCVTCGKKFYPKSYSAYPQDDYSYTDYPTRYEVEPSHKHFHSQSCMKEWIARYSREFSNLIDNISHNVIQDNNNQSLTERINNGSE
Ga0209992_100432415F056072AGGAMEANKLRLNQQKRQLLKREWASTVWNKTPMEVEDNLRLAIDNYRTVKQQTWDNVITPIMDKRFPLEDMEVLAKYDRGSNHYRSFTEIDQCFYFKPTHTDSSESQYKWTISDEEMRALYHFELQEKGHQATLEVEYDETKRDRNPHYHEKTKAMEEDLAKVSASLDRGLWQKGRYHNREYSDDISAFSRIVPNTGGCHSRTMMCEEHHWEQLKMYAKAQSYLTNAHR

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.