NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244777_10070836

Scaffold Ga0244777_10070836


Overview

Basic Information
Taxon OID3300024343 Open in IMG/M
Scaffold IDGa0244777_10070836 Open in IMG/M
Source Dataset NameCombined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2239
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003691Metagenome / Metatranscriptome473Y
F005299Metagenome / Metatranscriptome405Y
F008359Metagenome / Metatranscriptome334Y
F077291Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
Ga0244777_100708361F003691N/ALARIKYCRIFMYWVERMTPHIVKNYNMNSRMTNEFTETAFNTSRNERPIYRNFAASKLSNSIKPQSIVEFTDFMGRKHKVAVRNNTELKKQMKFFGMLKKESATIKQIISQYPIKLGKVEKRFLAECKRELKSVLKLNNKQLEIVLG
Ga0244777_100708362F008359N/AMSKSKVNVKSNYDIKKVKRVMRMKNEGFEPTSFEVFKVSGPNKFKKYFVSRKDAKSFIDNYTDTKMTLGIVKNIMNEIKVK
Ga0244777_100708363F077291N/AMKKEITLTMTLKQLESIIFTMGIALDTDCRPMNDLSEKKFEKISILREVLEDMLNQAK
Ga0244777_100708365F005299N/AMNKNNTITPNHLIDPIDSPNEIWESKVGYDSANKRMIAKVYHSLYYIMEHSTLKPSWLAVVRHMLTMDGRLNEVKVNGYYSTIRKNLKDIEVIQYNGRKGLSKGKNWDRFFSDEDWTWFITNTNSGGYGRILR
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