NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244777_10022891

Scaffold Ga0244777_10022891


Overview

Basic Information
Taxon OID3300024343 Open in IMG/M
Scaffold IDGa0244777_10022891 Open in IMG/M
Source Dataset NameCombined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3951
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (81.82%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000684Metagenome / Metatranscriptome938Y
F002515Metagenome / Metatranscriptome552Y
F011487Metagenome / Metatranscriptome290Y
F013527Metagenome / Metatranscriptome270Y

Sequences

Protein IDFamilyRBSSequence
Ga0244777_1002289111F013527N/AIDVEAESYDEAIDVFQFQLKYGISKDNVYVADIKQLTNNNESVEV
Ga0244777_100228915F000684AGGMTMNGYTYQIGDLFTTSKTGVTGRIASFSPMSNKVTRVSLVLANGSRRLAMVKTSK
Ga0244777_100228917F011487AGGMTFENDEILDEYYATTCPSCRENSVDEYEEKCTHCLLEEMSATYNEDIALEMSLGLDY
Ga0244777_100228918F002515N/AMKKTQEELRRLMELRRSNAASAVPSKKKYTRKGRKCQSDMLQLKENN
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