NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244777_10011008

Scaffold Ga0244777_10011008


Overview

Basic Information
Taxon OID3300024343 Open in IMG/M
Scaffold IDGa0244777_10011008 Open in IMG/M
Source Dataset NameCombined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5748
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (73.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004432Metagenome / Metatranscriptome438Y
F041187Metagenome160Y
F103130Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0244777_100110081F004432N/APVKRRIAKPKAEATPKPPAKTPADTLGKIIGLIEWVDSPFKLLTVILLSFLAFAGYFAWDSRQVILQAIQNQDHMPQLVKQDDLVEPAKSLMKDVDGLVVLVHKANLTTNSRTTVLAMNADGSREKKLEGTVTSLFNASSDRNAAMVAMLNNEVLCEEFNPSSKVGEWGVKQGVKFMCRGSIPPDPGKFAGYLAIGFKEKPEDISALKTRINLASTDMSDE
Ga0244777_100110086F041187N/AMTNRPDFATWSQANLAKFADEAYAKLCEQDDMIQHLQCDLKTAIEAYRTLTKQMPESQPC
Ga0244777_100110089F103130GAGGMKRIDLWKAKLKIAKAERRIRERDANAATRALMRVRATITELENKIERHLAQP
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