| Basic Information | |
|---|---|
| Taxon OID | 3300024343 Open in IMG/M |
| Scaffold ID | Ga0244777_10010523 Open in IMG/M |
| Source Dataset Name | Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5884 |
| Total Scaffold Genes | 14 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (78.57%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Columbia River Estuary, USA | |||||||
| Coordinates | Lat. (o) | 46.234 | Long. (o) | -123.9135 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F034575 | Metagenome / Metatranscriptome | 174 | N |
| F038241 | Metagenome / Metatranscriptome | 166 | Y |
| F040623 | Metagenome / Metatranscriptome | 161 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0244777_100105235 | F038241 | GGGGG | MLGYTKEDLDHMSNSIHDAKLFYIMKSDVTYVDKDPMVDGLLKAHDFLQGLWAEGYFD |
| Ga0244777_100105236 | F040623 | AGAAGG | MKVKISLEQTIDIDDAMSNDIGFELYGPPDMSTEDKVDYLIARFAEDIDTMVKYDEVLGNISVEYIED |
| Ga0244777_100105239 | F034575 | GGAGG | MDSMTLDPYLMKQVEMGMDGADILHGHLKPLMYEAEPILTACIEVEEENDYSDAMESMERTEATGYLDALSHVYALTYAIAFAKEDVKNRKEILGE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |