| Basic Information | |
|---|---|
| Taxon OID | 3300024343 Open in IMG/M |
| Scaffold ID | Ga0244777_10000222 Open in IMG/M |
| Source Dataset Name | Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 44801 |
| Total Scaffold Genes | 52 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 48 (92.31%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Columbia River Estuary, USA | |||||||
| Coordinates | Lat. (o) | 46.234 | Long. (o) | -123.9135 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F009065 | Metagenome / Metatranscriptome | 323 | Y |
| F019997 | Metagenome / Metatranscriptome | 226 | Y |
| F021093 | Metagenome / Metatranscriptome | 220 | Y |
| F062705 | Metagenome / Metatranscriptome | 130 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0244777_1000022233 | F021093 | GAGG | MGNPFIVAEDLALKSHVQGMLVGDEKNAERPVKVWFGYPDVEVRAQEFPFVTIDLIDVIPANDRQNSGYLYDTDNRGTVAPEAGFTYVYEIPVAYDLVYQVTTYARNPRHDRALLYQMFNKFPSKYGKIAVPNELGTEIGYRSMFVDGFVKRDAVDGETGNRRTLRNVYTVRVVSEMTPSVAAKKLSTVEEIIINLPQNNSYIPSVYEIL |
| Ga0244777_100002224 | F019997 | AGGAG | MNKEQLTAALGTYLRASAASVVALYMSGITDPKTLLNAFIAGLIGPLAKAVNPKDKAYGIGASK |
| Ga0244777_1000022249 | F062705 | AGGAG | MSKVMDTKLVQVFLSQSQTPGPGIFEVSVDDDNKFYCTCQGYKGRSTCKHVKFVQARVKSNGGDNYPLEFSSRATKDDVFKAKQSKEDFRDFVIRFGKIEVF |
| Ga0244777_100002229 | F009065 | GGAG | MSFFKKEAWTKPFPEKVARRVSKIPTGELEMWADQAITEIGRCLSGYTKNRDAVYLNEALKGAEALHAVVDQLHTRMSKPL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |