NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247668_1000140

Scaffold Ga0247668_1000140


Overview

Basic Information
Taxon OID3300024331 Open in IMG/M
Scaffold IDGa0247668_1000140 Open in IMG/M
Source Dataset NameSoil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK09
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21192
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (46.15%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)40.4449Long. (o)-87.0297Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016574Metagenome / Metatranscriptome246Y
F087640Metagenome / Metatranscriptome110Y
F103772Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0247668_100014011F016574AGGAGMLEPDVISRIRHIFLQPRPHVSIMQAEGLLGWSRRQMSEAIGNGEVELWTTPLGKWFPRAEMMAKALEIWPMHVIEEALGDEADGILPQAIRSAELRVRLPRHHIDMLHYRADQQETTVSGVLERELDGIASAHIEELSAALPGFAEAMAWPAG
Ga0247668_100014023F103772AGTAGGMRKNVASAIFLVLAAGCASTAVNERPEPNVVELWSVPSHASVSLDCGAGRIEEGTTPLRVDVPRYPERCSIDFAAEGYRPLHMRFDRGLVLREGLPLREEEHHQLEQSATTLDMLLFPLQNLSDNIQNAAMRKLRADYRLEVKLIPR
Ga0247668_10001409F087640GGTGGMSEAIEAGEVELWTTPLGKWFPRAEMMAKALEIWPLHVIEEALGNDADGILPQAIRSAELRVRLPRHHIDMLHYRADLQETTVSGVLERELDGIASAHIEELSAALPGFAEAMAWPGEGW
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