NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0233398_1005508

Scaffold Ga0233398_1005508


Overview

Basic Information
Taxon OID3300024320 Open in IMG/M
Scaffold IDGa0233398_1005508 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 38D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4095
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005132Metagenome / Metatranscriptome411Y
F008384Metagenome334Y

Sequences

Protein IDFamilyRBSSequence
Ga0233398_10055082F005132AGAAGMVDIIFIDDNYLYKNFPLPKRLDRGALLALIQLEQYTSIQDLLGSCLYEHIEAKVVSESLSTKEEGLFKLVKYSLAMYSAKAAISVLRSETARTKNEESKSDQRSLDAIASSIESKTSYINKRIVNYILDNPILKARATAEGCDNDLFEAEDVYQDASVFYPNSKTSEDC
Ga0233398_10055088F008384GGALKRNTRYNKQHIEKEAVLSLNQGRITEPLGAFIYQRAIEISGSAFITNGDKELKQSLIDEAVMRVCEKFLHYYKEGGSAANLIITMIYSTMTNKIVGLKWKDKYGHRIKGKVVCIENGERLTRLVKYVKDDNISERL
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