NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228654_1024813

Scaffold Ga0228654_1024813


Overview

Basic Information
Taxon OID3300024316 Open in IMG/M
Scaffold IDGa0228654_1024813 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 66D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)864
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018724Metagenome / Metatranscriptome233Y
F044417Metagenome / Metatranscriptome154Y

Sequences

Protein IDFamilyRBSSequence
Ga0228654_10248131F018724N/AMTTQLHELNGKLDMLNDLKIQGLGLSLDQQEKLLAIHQQLLDRRFELIKQIKKEYI
Ga0228654_10248132F044417N/AMTTEQVNKIKKKIARQNQRTQSLMANYIRPVKGVTRVTFSRKAQWDHIDTTKVYYSYTKLQA

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