NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0228629_1089063

Scaffold Ga0228629_1089063


Overview

Basic Information
Taxon OID3300024296 Open in IMG/M
Scaffold IDGa0228629_1089063 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 36D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)826
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044364Metagenome154N
F095586Metagenome / Metatranscriptome105N

Sequences

Protein IDFamilyRBSSequence
Ga0228629_10890631F044364N/ANISTIKNLTSKISSEFSRMKSSKSLEDKVMNLGNMISLLSKQNEELAEQISKSTK
Ga0228629_10890633F095586AGGAGMKNSTHYIKTSFRHYDYLKDILERAGQLTKLSQSELIRNACLGQYVP

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.