NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228664_1004552

Scaffold Ga0228664_1004552


Overview

Basic Information
Taxon OID3300024294 Open in IMG/M
Scaffold IDGa0228664_1004552 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 78D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5696
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (7.69%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036974Metagenome169N
F042076Metagenome159N

Sequences

Protein IDFamilyRBSSequence
Ga0228664_100455210F042076N/AMRMQLNSYVLLHTFNFWIMRGEIDIFNIEDDIVEFGIHDTSFRVCIEQETYWIEEAVSFNSFTDTIQYEEHQETTTFVRIDTLECEGILYYSKEDICSELERILNEDK
Ga0228664_10045529F036974N/AMIEPFKLEFWDNFNDSLYFDYLLKREEMLNTYRITYKTYKGSDTSAPVSYAIKYIKAYNRHDAINAFNLWKGLIIKVEICD

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