NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247667_1005223

Scaffold Ga0247667_1005223


Overview

Basic Information
Taxon OID3300024290 Open in IMG/M
Scaffold IDGa0247667_1005223 Open in IMG/M
Source Dataset NameSoil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK08
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2774
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)40.4449Long. (o)-87.0297Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007373Metagenome / Metatranscriptome352Y
F007553Metagenome / Metatranscriptome349Y

Sequences

Protein IDFamilyRBSSequence
Ga0247667_10052231F007553AGAAGMDVSGERFRRRKLGAVFKMFEDKICAVDFCEAAGVASLAQQDFCLNHFIDLCYENLQRIDPRGQQAGRIPLDLPALRAFVEECSLRALDVALHCEDLDNLQRGRLLDILLWAGELFVVLRAP
Ga0247667_10052232F007373GGAMRSPNAGRTNELGGSVPRSVQDDNLPVAKSRTFDSNALRASAKTAGMCHPGSRITALSIEFVAKPNEAHKVQAALPAGIDGAFGEIAGFAGSFVMVANHEARLVTVVTLWIGEDRLQRCNENVRWVRALLAPYLDRCLRVQTLAAFVPGALQFSQQFEQPCIEGALARGLNEEESMCVA
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