NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255147_1020114

Scaffold Ga0255147_1020114


Overview

Basic Information
Taxon OID3300024289 Open in IMG/M
Scaffold IDGa0255147_1020114 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1403
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.4271Long. (o)-81.6053Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007310Metagenome353Y
F010398Metagenome304Y
F013084Metagenome274Y
F043399Metagenome156N

Sequences

Protein IDFamilyRBSSequence
Ga0255147_10201142F010398AGGAGMQVTIEGVMKVNYQLTVDEDVFNEACQDAGLDPKDYKKFTKDQWEELNPHLVQVVFDNEADVDETEIHEQSTIFADTVTIDDPDHMTTVYYNQDRTFDSVEIM
Ga0255147_10201143F043399N/AMFLDDFPIVIWTIVKKNNNYILLDSCGIEVMRRKEIRKKEIYQYCEDNGIDYQEEF
Ga0255147_10201144F013084N/AMGIMNVITLMQEAKQSAIFRGHNVKNWDVLGNDCYSLVCKDCKMQVMFKEFPLPNEIQVGGEAVALSCVKPEKKKLSKKT
Ga0255147_10201145F007310AGTAGMRVVLWNDTERWSNHHHYEFLIQDITGFNLQESLCSETIKYMAKRLNDTPYHRIFRSKYSIYQDEYKSLVEKFNHQANNNGRIVV
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