| Basic Information | |
|---|---|
| Taxon OID | 3300024289 Open in IMG/M |
| Scaffold ID | Ga0255147_1009280 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2177 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 31.4271 | Long. (o) | -81.6053 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000671 | Metagenome / Metatranscriptome | 945 | Y |
| F002060 | Metagenome / Metatranscriptome | 597 | Y |
| F011394 | Metagenome / Metatranscriptome | 291 | Y |
| F013878 | Metagenome / Metatranscriptome | 267 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0255147_10092802 | F002060 | AGG | MDYTSITIALLAAVFSGMGTALVAGLRDAKKEKRRQVEREQDHLKLEIKDLKIALYQLEKELTEWKDKYYNSIQELIQVKAELENALVQLNIIEFKEVDQEF |
| Ga0255147_10092803 | F000671 | GAGG | MTEKILCYSCNKSKNKLNAKRSSLLPINLLMCESCINSKFEPRWVVILSGRQNGMESVRDFVLKKRYLGNDIAASELII |
| Ga0255147_10092805 | F011394 | GAG | MSNFYDNGAFKYGINQWTGEPNKPVFYNKEMSQKIKSLIKPAHDLQMDIVKYPEFLAIRLYEDNFKQYDGSIKLRVIDYIEMVKKIIESFGVRCELEGAPGERILRNN |
| Ga0255147_10092807 | F013878 | AGGA | MLNLTQKGVEIFIKKAKNIEPFWNNYDLIIWKKDPSGFSSIKGMFRNNSWGTAETVKVNDDGIWKLSKKYVRHFR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |