NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255147_1007633

Scaffold Ga0255147_1007633


Overview

Basic Information
Taxon OID3300024289 Open in IMG/M
Scaffold IDGa0255147_1007633 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2428
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.4271Long. (o)-81.6053Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025265Metagenome / Metatranscriptome202Y
F058813Metagenome134N
F065732Metagenome / Metatranscriptome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0255147_10076331F025265N/ANEIRLDATPAEFLEYIAPACGQTLLVGVEVEPNGEWQGKPQFKYKLSYPRGSQKPTVAEPTPENPPF
Ga0255147_10076333F058813GAGGMEPMSAPTLVLISGFARAGKDTLAEGILEWSRRPSRKTSFAAHLKDAANDFLWSLNIEADFHNEAFKVKHRDVLVTLGKFARSLNPDIFAENLAHYVPIQMTPDEVAPETVVCSDWRYINELRVCQSILWDLGWKVRTVYVSTAGVGPANDEELDSICEIKQFHSFDQEFVFAPNSRQCILAEGRHLAKTWNL
Ga0255147_10076334F065732N/AMEPLNLGEAMSADERIAWAKRAGLTEERIAFLLACPKFTRTGRNDKPAFIKTENPNHHLQKLGACWWLRIRRRKTDILHNLGKDLETARRHRDEMLAAYDAGLPIPHLQSK
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