NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255147_1004786

Scaffold Ga0255147_1004786


Overview

Basic Information
Taxon OID3300024289 Open in IMG/M
Scaffold IDGa0255147_1004786 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3110
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.4271Long. (o)-81.6053Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001460Metagenome / Metatranscriptome690Y
F005745Metagenome / Metatranscriptome391Y
F023344Metagenome / Metatranscriptome210Y

Sequences

Protein IDFamilyRBSSequence
Ga0255147_10047865F005745AGGAGMEEQGIFTEKLDPHLQRMVDAGVSGLDIMHGHLKILMLEAEAQYAEAQRVEEEDDYSDAMQSMERKYWEGMSDAYTHLYKLTYDLSFAIAGLRKDSNGE
Ga0255147_10047868F001460GAGMLGYTEEDLNRMINAVHDAKLFYLRSPSDLIDKAPLKKDLEDAVSFMQGLWAEGYFD
Ga0255147_10047869F023344AGGCGGMEMFTDNMNEMLLGAIQVDIEQHLFEQWNNSNLDEGEEYAEFKFIEFAPDNVKQSYNEFYGYKEGDEYFQC
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