| Basic Information | |
|---|---|
| Taxon OID | 3300024289 Open in IMG/M |
| Scaffold ID | Ga0255147_1000810 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8151 |
| Total Scaffold Genes | 23 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 21 (91.30%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (100.00%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 31.4271 | Long. (o) | -81.6053 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000684 | Metagenome / Metatranscriptome | 938 | Y |
| F000808 | Metagenome / Metatranscriptome | 882 | Y |
| F006744 | Metagenome / Metatranscriptome | 365 | Y |
| F007363 | Metagenome / Metatranscriptome | 352 | Y |
| F014129 | Metagenome / Metatranscriptome | 265 | Y |
| F017484 | Metagenome / Metatranscriptome | 240 | Y |
| F038643 | Metagenome / Metatranscriptome | 165 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0255147_10008101 | F017484 | AGGA | MSIEIFEMNENGAGWVSLENASASTKLDLELALLTKAEVKMLCFKCHVEIPRGNVCVNHKNVKGAIYFAD |
| Ga0255147_100081010 | F007363 | AGGA | MRSYSIVDLLIDQYYAPTSLRRRFNGGIINFAEKREDIYLSEGYEAFAIRYRPTGSLKDEWATVAVRVSDY |
| Ga0255147_100081013 | F000808 | GGA | MDYNYSLTISYDGELVSTTRSADLLEIVNAWNKCVDYGDAKEYATYNLSDPMGKMYTKNFYRNGEVNGK |
| Ga0255147_100081015 | F038643 | AGG | MQNWVKFPFTVDGVEFVSLVDPTGNMYQQIKRIPAEVFTSMNSDAIRELIGKVSLMSKSEIQAELDRVNDGYQQAYLALA |
| Ga0255147_100081019 | F000684 | AGGA | MTLGGYTYQVGDLFTTSKTGVTGRIEKFVPISRNVTKVMLRLANNQQRFAMVKTY |
| Ga0255147_10008103 | F014129 | AGG | MTTLKNEIRVITLDNVNADEANLIVCSFCDDYASDTFCGKCNEYKGLMTLAEWLSYTNESWVM |
| Ga0255147_10008105 | F006744 | AGG | MKLEEYKALVIAQREASKAEALSVLSATISKTQKKEVNK |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |