NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0255147_1000102

Scaffold Ga0255147_1000102


Overview

Basic Information
Taxon OID3300024289 Open in IMG/M
Scaffold IDGa0255147_1000102 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)35523
Total Scaffold Genes62 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)57 (91.94%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.4271Long. (o)-81.6053Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001143Metagenome / Metatranscriptome766Y
F006545Metagenome / Metatranscriptome370Y
F032263Metagenome / Metatranscriptome180Y
F037075Metagenome168Y
F104460Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0255147_100010244F001143AGGAMAAWLIAIIGVVYLVVAVQLLLQGKIGLGIAFVGYALGNVGLYIAAR
Ga0255147_100010246F104460AGGAMSQQVMIEELTKEIYLAIEKFNEALPLASVVGVLEVIKYELILNIGDDDET
Ga0255147_100010248F037075N/AMVSEERLKNWGWWCAFGHLGPEVRTQCASAEGNYESEDVFEGEEPRVEPDMLDGEAVENAVRHLPELSRRVLKYRYIMFPYHLQHTVAQKLKMSTDRLETELTVAKRRLHDRLQRAGQQ
Ga0255147_10001025F032263AGGVKSVWEKARPKSLPKPKALSKNQKAAAKRFAKETGRKYPSLLANMRGAQAKK
Ga0255147_10001026F006545AGGMKVKDAAKIFEKYDTRTSRKMAEYNREGGGVRKPVRSVAGASTGDKYDRAKFIYRKAAQALTAGHPLKDDNGTPTPAALQFKRWAAKVPQNRQDLQDLKALGSRLKERYKPKK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.