NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255205_1006915

Scaffold Ga0255205_1006915


Overview

Basic Information
Taxon OID3300024276 Open in IMG/M
Scaffold IDGa0255205_1006915 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Cont_RepA_8d
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2026
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Louisiana
CoordinatesLat. (o)29.8571Long. (o)-89.9778Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000888Metagenome / Metatranscriptome847Y
F001882Metagenome / Metatranscriptome622Y
F003213Metagenome500Y
F097246Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0255205_10069151F097246AGGMTENIDPRTDPQFKALMQVMQDITSNKVPFYEPHELAARSTLRALQHQIDDRNVLD
Ga0255205_10069153F001882N/ALTKPYVVTQQPVVKSALAGTQKWAQLACKNSNGSLWINGIYVNRDMRTRPGILSNHARGLAMDLSYRWLSQKTLGRQDGRKTSLAFIVKCLQNAEHLGIQLVIDYQLQRSWRCDRGTWKPLPSVEQGDWYHIEIEPLLGHNADITKQRFLAVFGAFPTSPSKPV
Ga0255205_10069154F003213N/AMSSKKINKAKRQIGDQTTKGGLIGLMIYGLSTNNVDPVLISLLVPVVSSVLAWVSTKIGDPDLACLFIPHDDENKN
Ga0255205_10069155F000888AGGMGAQYFAQLDNNNVVLTVHVVTEEFMAENPERYPGVWVETFIDDTHTYAGIGYTYDETTQDFIAPQPEPEPIEPDDVE
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